PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_0391 FitnessBrowser__Dyella79:N515DRAFT_0391 (341 amino acids)

SeqID: N515DRAFT_0391 FitnessBrowser__Dyella79:N515DRAFT_0391
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 2498162: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_0391 FitnessBrowser__Dyella79:N515DRAFT_0391
MADRRRFLKTAALGVTAAALSSRIAPALADGKAAGMSGGRKPRVISTWDFGVPANLAAWA
VLAKGGRALDAVEAGVMIPEADLKNHSVGRAGYPDRDGHVSLDASIMDGDGSCGAVAALE
GIAHPIQVARRVMERTPHVLLVGEGAQQFAVEQGFKKEKLLTPESEKAWHEWLKTAHYQP
SANSEVRDYGKGAGGKDNHDTIGMLAIDAQGRLAGACTTSGMAWKLRGRVGDSPIIGAGL
YVDGEVGGATSTGVGEEVIRNAGSFLVVELMRQGRSPQQACEEAVMRIVKKRPQAAKDLQ
VGFLAINREGEVGAFAIQSGFSYAVCDGAKQDGLFPSKSVY