PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_0596 FitnessBrowser__Dyella79:N515DRAFT_0596 (357 amino acids)

SeqID: N515DRAFT_0596 FitnessBrowser__Dyella79:N515DRAFT_0596
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_0596 FitnessBrowser__Dyella79:N515DRAFT_0596
MNAAARRLASVDALRGCTVAAMLLVNDPGDWSHVYWPLEHAQWHGCTPTDLVFPFFLFVV
GVSVALAIAPRMEQGADRGALMRAALVRALRIVGLGLLINAAAALILPDAHMRIPGVLQR
IGICFAAAAAFQLYANGRVQWSAIAALLAGYAGLLALGGTLEPFQNIVSRTDTTVFGHFA
YRYFPATGLGHDPEGLLGTLPSIATSLLGLRAGHWLRRDDRRALLLSGVAYVLLGAMWSL
LQPLNKNLWTPSFVLWTAGWATLALLAFHLLVDLRGWPALGRRFGVNAVAAYAGSEFMQI
LLPGLGIQDPLYRSVFAGWITPLAGPYVASLAFAVTFVAVWWAIVWAMDRRRIYLKL