PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_0700 FitnessBrowser__Dyella79:N515DRAFT_0700 (466 amino acids)

SeqID: N515DRAFT_0700 FitnessBrowser__Dyella79:N515DRAFT_0700
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598039: probable aldolase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_0700 FitnessBrowser__Dyella79:N515DRAFT_0700
MKIERKRFAMNADIQLSTSPSAWTPASWQRRTALQQPLYENAGELAQATAHLARLPPLVT
SWEVLALKQALAEAQEGQRFLLQGGDCAESFADCTSPVISNRLKVLLQMSLVLVHGMRMP
VLRVGRFAGQYAKPRSTDMETRDGVTLPSFRGDLVNSPEFTAEARRADPQRLIQAHAHSA
LTMNFVRALIDGGFADLHHPEYWDLAWVEHSPLAAEYRRMVAGIGDSLRFMETLAGPIAG
FTRVDFFTSHEALLLHYEEALTRQVPRHPGWFNLSTHFPWIGMRTAALDGAHVEYFRGIR
NPIAVKVGPSVTPEQLLPLVEALNPDDEPGRLTLIHRMGNAQIAKALPPLLDAVKRAGRR
VLWVADPMHGNTESTSNGYKTRRFDNIRGELDQAFDIHAAAGTRLGGVHLELTGEDVTEC
MGGARDLSEADLDRAYKSTVDPRLNYEQSLELAMLIVHKSQKGGRA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory