PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_0701 FitnessBrowser__Dyella79:N515DRAFT_0701 (541 amino acids)

SeqID: N515DRAFT_0701 FitnessBrowser__Dyella79:N515DRAFT_0701
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599679: |Glu-tRNA(Gln) amidotransferase subunit A|5013974 - 5015428]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.76
    Periplasmic            0.24
    OuterMembrane          0.00
    Extracellular          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_0701 FitnessBrowser__Dyella79:N515DRAFT_0701
MTRLPLSLSLAALLLASTALPAQSADPALAWASIKELQQRMDAGQLRSEALARLFLERIQ
RIDRDGPALRAVLETNPDALKLAAQIDRQKPKGALRGIPVLLKDNIDTGDRMLTTAGSLA
LADAPPAPRDAGLVARLRKNGALILGKTNLSEWANMRSNHASSGWSARGGQTRNPYALDR
NPCGSSAGSGAAVAAGLATVAIGSETDGSIICPAAANGIVGIKPTVGLVSRSGIVPISHN
QDTAGPMARTVADAAAVLGAIAGSDPRDPATAEADKHATDYTRFLDPNGLKGKRIGVVRG
LAGAEPNADRILEQSIALMKAQGAVIVDPVELPHLKELGDPELTVLLYDLKQDMQAYLAT
RTGTSMKTLADLIAFNKREAEREMPWFGQELFEQAQAKGPLTDKDYVEAQAKAKRFAGPE
GIDVALAKDHLDALLAPSWGPTFVTDPVLGDHVVSGDPTVGGASQPAAVAGYPSITVPAG
FAHDLPVGIVFFGAKWSEPTLITIAYGYEQHAQAWRAPRFLDTVGGKPVMADADHVLEMT
R