PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_1105 FitnessBrowser__Dyella79:N515DRAFT_1105 (288 amino acids)

SeqID: N515DRAFT_1105 FitnessBrowser__Dyella79:N515DRAFT_1105
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 115305792: Glutamyl-tRNA synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_1105 FitnessBrowser__Dyella79:N515DRAFT_1105
MTYRGRFAPSPTGRLHFGSLVAAVASWLCARHAGGRWLLRMEDIDPPREVPGSARDILDA
LPAFGLAADEPVLFQSHRLDAYEAAFQRLRDHDQVFPCWCSRADLAAAGGMHRDGHCVAS
PDPSRAPAWRLRAPDLEIAFVDRLQGPQRQNLRQAAGDFVIKRVEGFYAYQLACAVDDAW
QGVTEVVRGNDLLDSTARQLWLQRCLGLPTPAYLHLPLAVDADGRKLSKSENAHPVDPRD
PLPALQRALHFLDLPVDASANHPDALLSQALAHFDPARLPHCSERPAS