PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_1248 N515DRAFT_1248 ABC-2 type transport system ATP-binding protein (315 amino acids)

SeqID: N515DRAFT_1248 N515DRAFT_1248 ABC-2 type transport system ATP-binding protein
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 121397: Glutamine transport ATP-binding protein glnQ]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_1248 N515DRAFT_1248 ABC-2 type transport system ATP-binding protein
MTEQATPTPHAVSVRGISKTYKGGFQALKSIDLDIRRGEIFALLGPNGAGKTTLISIICG
IVKPSAGTVSADGHDVLRDYRLTRAKIGLVPQELSTDAFETVWAAVRFSRGLFGRARDDR
HIEKVLRDLSLWEKKDAKIMTLSGGMKRRVLIAKALAHEPSILFLDEPTAGVDVELRHDM
WEMVRRLRATGVTVILTTHYIEEAEEMADRVGVITRGELILVEDKRALMRKLGKKQLSIS
LKSPIQALPQGLDEYALELADDGATITYTFDAQGEDTGIAVLLRKLGDRGVDFKDLHTLE
SSLEDIFVSLVRGTR