Running PSORTb v3.0 on N515DRAFT_1419 FitnessBrowser__Dyella79:N515DRAFT_1419 (916 amino acids)
SeqID: N515DRAFT_1419 FitnessBrowser__Dyella79:N515DRAFT_1419 Analysis Report: CMSVM- Unknown [No details] CytoSVM- Unknown [No details] ECSVM- Unknown [No details] ModHMM- Unknown [No internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- Cytoplasmic [matched 54294577: aconitate hydratase [Legionella pneumophila str. Lens]] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: Cytoplasmic 9.26 Periplasmic 0.48 CytoplasmicMembrane 0.24 Extracellular 0.01 OuterMembrane 0.01 Final Prediction: Cytoplasmic 9.26 -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in the ENIGMA genome browser
>N515DRAFT_1419 FitnessBrowser__Dyella79:N515DRAFT_1419 MLDSFATRDTLKVNGSSYQIASLAKLGQRFDIKHLPYSMKILLENLLRHEDGVNVTAKEI EAVARWNPKAEPDTEIAFMPARVVLQDFTGVPCVVDLAAMRDAVVKLGGDAKQINPLAPA ELVIDHSVQVDVYGSESALEQNVAIEFQRNQERYAFLRWGQKAFDNFKVVPPRTGIVHQV NLEYLGRVVFTGEKDGQSWAYPDTVFGTDSHTTMINGVGVLGWGVGGIEAEAAMLGQPSS MLIPQVVGFKLTGKLAEGVTATDLVLTVTQMLRKLGVVGKFVEFFGPGLKDLALADRATI GNMAPEYGATCGIFPVDQEALNYLRLSGRSEEHIELVKAYAQAQGLWHDENTPHAQFTTT LELDLGDVRPSLAGPKRPQDRVLLQDVEKSFRDALGPLTANRRPRNGDTSNFINEGGSAA IGNPANAVSESGVLVEKNGESFRLGDGAVVIAAITSCTNTSNPAVMLGAGLLAKKAAAKG LKAQPWVKTSLGPGSKVVTDYLEKTGLLQELEKVGFYVVGYGCTTCIGNSGPLPAEISKG IAEGDLAVASVLSGNRNFEGRVHPEVKMNYLASPPLVVAYALAGSLDVDLSKDPLGTGSD GQPVYLRDIWPSNQEISDTIAGAINPAMFAKNYADVFQGDDRWNHIASPDGSVYQWGDST YIKNPPYFDGMTREVGKVEDIHGARVLGLFGDSITTDHISPAGSIKKDSPAGRFLIGKGV EPKDFNSYGSRRGNDDVMVRGTFANIRIRNLMLDGVEGGYTLHVPSGEQLAIYDAAMKYK AEHTPLVVLAGKEYGTGSSRDWAAKGTLLLGVKAVIAESFERIHRSNLVGMGVLPCQFED GQSAQTLGLTGKEVFDITGLNDGESKVAKVTATAPDGSRKEFIVKVLLLTPKEREFFRHG GILQYVLRQLASKKAA
Lawrence Berkeley National Laboratory