PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_1567 FitnessBrowser__Dyella79:N515DRAFT_1567 (594 amino acids)

SeqID: N515DRAFT_1567 FitnessBrowser__Dyella79:N515DRAFT_1567
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 130693: Pyruvate dehydrogenase [cytochrome]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_1567 FitnessBrowser__Dyella79:N515DRAFT_1567
MQTVGDFILERLSDWGIQRVFGYPGDGINGLMGAMGRAAERFDYVRVRHEEMAAFMACGH
AKFTGRIGVCLATSGPGAIHLLNGLYDARLDHMPVLAIVGQQARAALGSDYQQEVDLQAL
FKDVANYAQTVTTPAQVRHVLDRAIRIAQAERAVTVVIVPHDLQLMPAVPSPPRKHGNVY
SGVGLALPHPQPTAMELERAASVINASERVAILVGAGALDASTEVRQLAERLDAGVAKAL
LGKTVLPDDLPYVTGPIGLLGSKPSWRLMNGCDTLLMIGTTFPYSEFLPPDGQARAVQID
IAPRNMSLRYPAEVNLVGDAAQTIRRLLPLLSEKRNADWRERIEVDVRKWWRLLEGRAMA
PASPINPQRVFWELSDCLPDRAIVCGDCGSHTGWFARDVKLREGMLASLSGGLATMGGGV
PYAIAAKMAWPDRPVLAIVGDGAMQMNGNAELVTVKQYWRRWSDPRFVVLVVSNRDLNQV
TWEQRALAGDPKFDAAQDVEPFPYARYAELLGFRGLRVDRPEQITDAWRQAFAADCPVVI
EAETDPNVPPLPPHVNWQQAREYLAALAGPDSDRGPVARQTVRQVLAGLFGAED