PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_1910 FitnessBrowser__Dyella79:N515DRAFT_1910 (560 amino acids)

SeqID: N515DRAFT_1910 FitnessBrowser__Dyella79:N515DRAFT_1910
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 136182: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_1910 FitnessBrowser__Dyella79:N515DRAFT_1910
MTRSPHLLRAVLFAAIFTAAATQAATPDPAKTRAYIDQAWTTLTRSQDQCNALTDPKIAG
HPVLYVPAEMKVPSTLADIGKRCGVDIRPLPRAIQRLGDIDATKLPAQGLLYLPHPYVVP
GGFFNEMYGWDSYFIVLGLAADQRGKLARDMVDNALFEVEHYGAVLNANRTYYLSRSQPP
FLTAMMATVLGDPDAFASDAERKAWLAGAYPLAVRNHDVWTREEHRAGDTGLARYYDLGD
GPVLEAQNSDDFYVKVIKWLRAHPKDDPGYLLKGAQQPDDAEAARLAKDSCDVRASKVCL
GNWHDGYRLTADYYRGDRAMRESGYDTNFHFGPFGGSTHHYASVDLNSLLYRYELDLADF
ATKLGKSDEAKRWTDAAAARKQAMDKYLWRAGDGMYRDYDFVAGKPSPTPYINTFYPLWA
GAASPQQAAAVRGKLAVFERRGGLSMDNQPSGVQWNDPFGWAPTNWLAIKGLEDYGFHDD
ARRLAGNFTATVDRGLADDGTIREKYNMAKGNADVRVSAGYSENVIGFGWTNGVYLKLQE
ILQRNKAEPAPTPRVPETAK