PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_1999 N515DRAFT_1999 D-lactate dehydrogenase (456 amino acids)

SeqID: N515DRAFT_1999 N515DRAFT_1999 D-lactate dehydrogenase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600548: glycolate oxidase subunit GlcD[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_1999 N515DRAFT_1999 D-lactate dehydrogenase
MTLPTALLEALHASFAGDALSLGEAERLAYAYDNSRRNALPDAVVFPTSHEQTEALVRAC
REHRVPLVARGRGTNTTGATVPVDGGVVASFERMNRILRIDPDNRLAVVEPGVLNGDLQQ
ALKPHGFFWPPDPTSSPWCSIGGNLACNSAGPRTVKYGSPRENTLGLRAVAGTGVGFRCG
TYTSKGSTGYDLTRLLIGSEGTLALITEATLKLTPKPSGLRTLRATYRDVSAAARAVARI
MAQPVTPCALEFIDDVALKLARDHGGDSVPVAGAMLMIEVDGEPDTLAGAVEAVSRAARG
DGLESLQVAQSAEETQALWSARKALSPAQRTISPNKINEDVVVPVSRLPELVDGIKALAA
KHDVLIVSFGHAGNGNLHVNLLPRDEAERERAHACLAEVFALVIRLDGTLSGEHGIGLVK
REFMPLALQPETLGLMRGVKAAFDPDGILNPRKLLP