PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_2514 FitnessBrowser__Dyella79:N515DRAFT_2514 (273 amino acids)

SeqID: N515DRAFT_2514 FitnessBrowser__Dyella79:N515DRAFT_2514
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2506102: Ferrichrome transport ATP-binding protein fhuC]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_2514 FitnessBrowser__Dyella79:N515DRAFT_2514
MSLAMDWRALSDGEERWLEARDVHLHYGERRVLQAVNLRAQPGRVLALIGPNGAGKSSLL
GVLAGALQPSVGTATLDGVALERWPATELARRRAMLSQRVQLGFGFRAEEVAMLGRSPHG
ATSSRSADGRIVEEALKAAGAWSLFGRNYLELSGGEQQRVQLARVLAQIWDCRDAPGWLL
LDEPEAGLDIAHQHELLAQARQLAGQGFGVIAVLHDLNLAARYADDVALLAQGRLVRHGG
REQVLDAPMLSKIYGLPLACVRDGDGRPLIHAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory