PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_2777 FitnessBrowser__Dyella79:N515DRAFT_2777 (400 amino acids)

SeqID: N515DRAFT_2777 FitnessBrowser__Dyella79:N515DRAFT_2777
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129041: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_2777 FitnessBrowser__Dyella79:N515DRAFT_2777
MSIEVKVPVLPESVSDATIATWHKKVGEAIKRDENLVDLETDKVVLEVPAPVDGVIKELK
FQSGDTVTSQQVIAVIEEGAVAAAPAPAAAPAAAPAPAAAAPAAPAKGTADLSPAGLRVA
TEQNIDPSKVAGTGRDGRVTKEDLVNYGKGGAAAPAAAAPAAKPTPGARPEERVPMTRIR
ARIAERLMQSKNSIAMLTSFNEVNLAEVVKMRKTLGEQFEKSNGVKLGFMSFFVKAAAEA
LKRHPVVNASVDGNDIVYHGYQDISIAVSTDKGLVTPVLRDVQDKSFADIEKGILDYAKK
ARDGKLGLDDLQGGTFTITNGGTFGSLLSTPIVNPPQSAILGMHTIKDRAIVENGQVIAA
PMMYLALSYDHRIIDGKDAVLFLVDIKNQLENPQRMLLGL