PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_3101 FitnessBrowser__Dyella79:N515DRAFT_3101 (297 amino acids)

SeqID: N515DRAFT_3101 FitnessBrowser__Dyella79:N515DRAFT_3101
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 132127: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_3101 FitnessBrowser__Dyella79:N515DRAFT_3101
MARVVVVGSINMDLVTLAPRFAGPGETVLGERFLTVPGGKGANQAVAAARLGAEVTLIGA
LGDDTFGEQLREGLAREGIALDYVSRIDDCGSGTASITVAGGENEIIVVPAANARVTPAQ
VEAATDAIARADAVLVQMEIPLESVEATLRLGHRLGVPVILNPAPAQKLPTEWLKLARYV
TPNQHELAILLGADAQQDFRALMRQAPGPVVLTRGGEGAWYREDGEPTHQSGFAVDVVDT
TGAGDTFNGALAVFLHEGLPQAVRKACAAAALSVTRLGAQGGMPTRVELDAWLAGRP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory