PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_3248 FitnessBrowser__Dyella79:N515DRAFT_3248 (838 amino acids)

SeqID: N515DRAFT_3248 FitnessBrowser__Dyella79:N515DRAFT_3248
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 20141276: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_3248 FitnessBrowser__Dyella79:N515DRAFT_3248
MLAFVRRLRIAPIALAIALACLPLGAAPAADTAVHPEQWPAAKWPLPRNAALEQRVAELM
AKMSVEEKVGQLIQADISAVTPEDVRKYRLGSILAGGNSKPEGKTTATAEQWKALADAFH
RAAMDTSGGHQAIPLLIGIDAVHGHNNTVGATLFPQNSALGATRDPQLIREIGAATAAEV
RATGINWTFAPTLAVPQDLRWGRSYEGYSQDPKVVAQYASAMIEGLQGKAGTPKFLDASH
VIASAKHFLADGGTKDGKDQGDAQVSETELREVHAAGYPPAIDAGVQTVMASFSSWNGQK
MHGNKALLTDVLKGRMDFQGFVVGDWNGHGQVPGCSNTDCPASINAGVDMLMAPDSWRGL
YEHTLAEAKSGAIPAARLDDAVARILRVKFRLGLFEAGAPSTQPLATKSAEVIGSAAHRA
LARRAVRESLVLLKNNHGVLPLDPRKHILVAGDAADNISRQSGGWTLTWQGTGLGNKDFP
GAQSIGAGIAEQVKAAGGQVEIAADGRYTNKPDVAVVVFGEDPYAEFQGDLPNLLYRPGD
EHDLELLRRLHGDGIPVVAVFLSGRPLWVNREINVADAFVAAWLPGSEGGGVADVLLRKR
DGKIANDFHGKLAYAWPGSGVHGQGESRFPFGYGLRYADHAEALDLPEASGITGEQIPVG
NYLERGKSVRGYTFRLLGADGVAVAGDTSKSGTADGSLRMSALDYKAQEDARRFEWKKNG
AELAIQSRAPFDLDRQTNGDVLLVTTLRVDALPGKDAWIGMGCGAGCKGRVNLGPTLTSL
PAGTWTRVGVPLKCFRTAGADMHRIDQPFVWGAGAGSSLALARVALGTDADQVVDCPR