PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_3387 FitnessBrowser__Dyella79:N515DRAFT_3387 (497 amino acids)

SeqID: N515DRAFT_3387 FitnessBrowser__Dyella79:N515DRAFT_3387
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [14 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_3387 FitnessBrowser__Dyella79:N515DRAFT_3387
MTLSRTNGKPALTFWQIWNMCFGFLGIQFGFALQNANVSRIFQTLGADVGDIPMLWVAAP
LSGLIVQPIVGYLSDRTWTGLGRRRPYFLVGAVLATLGLLWMPNAPALWVAAGLLWILDA
SINVSMEPFRAFVGDQLPPRQRPLGYAMQSFFIGLGAVVASALPWILERLGVSNAPGVSG
IPDTVRYAFYAGGAVLLGSVLWTVCSTREYPPETLAAFDHAPVEETAVDRPAASRWGLLW
LAAGLALTAVVAFMRLEKELYLLTGGMSVFGVALLWLGRTASRGPAAQVLGDLFGMPEAM
RRLAWVQLFSWFALFAMWIYTTAGVTQVHYGSSDPHSAAYNEGANWVGVLFAAYNGFAAL
AAIVIPWMVRRWGIRISHLVNVWLGGAGFLSFLLIHDPRWLLLSMVGVGFAWASILSLPY
ALLSDNLPAHKMGVYMGIFNFFVVIPQLLAASVLGLLLRAFFHGQPIYALVLGGASLFVS
GLCVLRVREPSACGVAA