PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_3517 FitnessBrowser__Dyella79:N515DRAFT_3517 (743 amino acids)

SeqID: N515DRAFT_3517 FitnessBrowser__Dyella79:N515DRAFT_3517
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1708408: Isocitrate dehydrogenase [NADP]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_3517 FitnessBrowser__Dyella79:N515DRAFT_3517
MSNTPKIIYTLTDEAPFLATQSLLPIVKAFAGAAGIAVETRDISLAGRILAQFPDLLKPE
QKIADDLAELGQLATTPDANIIKLPNISASVPQLKAAIKELQQQGYALPDYPDEPKNEQE
KDAKARYDRTKGSAVNPVLREGNSDRRAPLSVKNYARKHPHKMGAWSKDSQSHVAHMDGG
DFYGSEKSATVAQATSVKIEWTGTDGKSTVLKDKTAISAGEIIDAAVMSRKALAAFVDAQ
VADAKQQGVLFSLHLKATMMKVSDPIMFGIVVGEFYKDVLAKHADTLKQIGFDPNNGIGD
LYARLNALPTDKQAEITADIKAEYARRPALAMVNSDKGITNLHVPSDVIVDASMPAMIRD
SGKMWNAEGKLQDTKAVIPDRSYAGVYQVVIEDCKAHGAFDPASMGSVPNVGLMAQAAEE
YGSHNKTFQIAADGVVRVVDDAGNVLLEHAVEAGDIWRMCQTKDAPIQDWVKLAVTRARL
SGTPAVFWLDPKRAHDAQLIQKVERYLKDHDTGGLDIRVMSPVDATRFSLERIRKGQDTI
SVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFLEEDYL
RWDSLGEFLALAASFEHLGNRYGNAKAGVLAKALDQANGKILDNNKSPARKVGELDNRGS
HFYLAMYWAQALAGQDDDAELKATFAPVAKALTENEEKIIGELNGAQGKAVDIHGYYHPD
IALLSKAMRPSATFNAAVDGLAK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory