PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_3763 FitnessBrowser__Dyella79:N515DRAFT_3763 (335 amino acids)

SeqID: N515DRAFT_3763 FitnessBrowser__Dyella79:N515DRAFT_3763
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2506960: Ornithine carbamoyltransferase chain F]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            5.96
    Cytoplasmic            4.03
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_3763 FitnessBrowser__Dyella79:N515DRAFT_3763
MTLRHFLTTQDYSRAEIDALLEQAAAFKRSPRGQQLAGKSVALLFFNPSMRTRTSFELGA
FHLGGHAIVLAPGKDAWPIEFDVGTVMDGDTEEHIAEVARVLSRYVDLIAVRAFPKFQDW
TVDREDRVIKAFAQYASVPVINMETITHPCQELAHALAMQEHLGSLQNKKYVLTWTYHPK
PLNTAVANSALLIATKMGMDVTLLCPTPDYVLDDRYMQAGYANAQANGGSLRISHDIDEA
YSGADVVYAKSWGALPFFGRWEQEKPIRDAHKHFIVDERKMALTNNGLFSHCLPLRRNVK
ATDAVMDAPYCIAIDEAENRLHVQKAVMATLLGQR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory