PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_3776 FitnessBrowser__Dyella79:N515DRAFT_3776 (428 amino acids)

SeqID: N515DRAFT_3776 FitnessBrowser__Dyella79:N515DRAFT_3776
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597276: kynureninase KynU[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_3776 FitnessBrowser__Dyella79:N515DRAFT_3776
MSNAYQATLEWARAQDAADPLRAFRDEFLIPPHDGRASHYFCGNSLGLQPRAVREALTAE
LDDWGALAVEGHFKGRQPWLDYHEYVRDDLAELVGALPSEVVAMNTLGVNLHLMMVSFYR
PTPDRHAILIEAGAFPTDRYAVESQIRFHGFSPTLSLIELEPDEPNGTLSMGAIERALAE
HGERIALVLLPGVQYRTGQAFDLKAITGLAHRQGCTVGFDLAHAVGNLPLRLHDSGADFA
VWCSYKYLNSGPGAVAGAFVHDRHARTEHLPRFAGWWGHDKQSRFRMGPEFVPTPGADGW
QISNPPILSLAPLRVSLQIFHRAGMARLREKSLRLTGYLEWLVQTQLADVLESVTPRETE
RRGSQLSLRVLGGRERGRALFEYLMEHGVVGDWREPDVIRISPAPLYNRFEDCVGFAEAV
RAWAHRPA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory