PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_4011 FitnessBrowser__Dyella79:N515DRAFT_4011 (769 amino acids)

SeqID: N515DRAFT_4011 FitnessBrowser__Dyella79:N515DRAFT_4011
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118508: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_4011 FitnessBrowser__Dyella79:N515DRAFT_4011
MSRKNTPALPQRRRFLQVLAGTAGALIVGVRYAEAGDAPVPPAMLGDTLYGLGAYVRIDA
DGNVLIGARDPDTGTGVATALPRILADELDADWARVSVVPLGLGVENGNGEPRWIYGHQV
GGTGSSIPAAWHDLRQAGALARWLLMQAAARRLGVPADRLRTQGGAVISPDGRRFDYGSL
AEAASKVAPPTAPVPVKTPDRYTLIGQPAGDVDARAIVTGQAQFAIDNYFGDALVAVLVH
CPWVDGTLADKDFHEAEAVKGVVKIVELKPEPGLLPGETPLAPSVAVLAEDTWSALQARA
KLKLEWKPGPSGSESSAALEQQANDLVNPREATAKGAAAKDAAARDNTPTMRVRNDGDVD
GMAKKAARRVDATYVQPWLAHATAEPMNCLARVDKDRAVLVAPTQAPQRAWSVVQRLTGF
KPDQIEIRVPRVGGGYGRRLDHDFVAEAVMLAKLADRPVRLLWTREEDLAHDFYRPASVH
RLSATLDRKRQIVTWDQRMASASALARRGTPEQRLWTSEVDVNQLPAGLVPNYRSDWYAL
QSALPRGPHRGMPHVSNAFAVESFVDEIANALKEDPLVTRLRLLGEAREVPLQGGGSFDT
GRLINVLKLVADRIEWRNWLRTVNGLGMACWHMDGAYVAHAIETSLQGEKLNIERVVCAV
DVGRVINPLGLEGQIAGATLDALSAALNLAITFKDGQPQQRSYKDYPLASMAQLPDAVDV
IIVPGDRDPAAASFLAMPTAAPALANAVFRVSAVRVRRLPLMKGLLRLL