PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_4303 N515DRAFT_4303 dTDP-glucose 4,6-dehydratase (356 amino acids)

SeqID: N515DRAFT_4303 N515DRAFT_4303 dTDP-glucose 4,6-dehydratase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600647: oxidoreductase Rmd[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_4303 N515DRAFT_4303 dTDP-glucose 4,6-dehydratase
MSSPLPGSSPLLVTGGAGFIGANFVLRAIAEGRKVVNLDKLTYAGNLDTLASLQDNPLHV
FVQGDIGDRELIARLLATHRPSAIVNFAAESHVDRSIDGPAAFVETNVVGTLALLEAARD
YWKSLEGGAAQSFRFLHVSTDEVYGSLGSEGKFTEQTPYAPNSPYSASKAASDHLVRAFH
HTYGLPVLTTNCSNNYGPYQFPEKLIPLVIQKALAGEPLPVYGDGMNIRDWLFVGDHCSA
IARVLEAGQVGETYNVGGNAERENLTVVKAICALLDERHPLADGRRREALITFVKDRPGH
DRRYAIDASKLQRELGWTPSQTFESGIAQTVHWYLDNQAWVERVLDGSYRMERLGQ