PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_4323 FitnessBrowser__Dyella79:N515DRAFT_4323 (469 amino acids)

SeqID: N515DRAFT_4323 FitnessBrowser__Dyella79:N515DRAFT_4323
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599679: |Glu-tRNA(Gln) amidotransferase subunit A|5013974 - 5015428]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_4323 FitnessBrowser__Dyella79:N515DRAFT_4323
MNQLPPISDRDLRRATLCQLLHWLAAGRVHPEGLAEVYLEAIERLNPQLNAYVGLSAGLL
REQARAAQHRRRDGVLGRLDGLPVAIKDNFDVAGWPTRAGLPGRAQPAQGDAHAVARLRA
SGAVLLGKTNMDEGALGASTDNPHTGPTHNPHRHGYTAGGSSGGAAAAVAAGMAVAAIGS
DSLGSIRIPASYCGVYALKPTHGEISARGLVPAARRLDAVGLLARSANDLTVLLQVLAGY
DADDARSRRRRVAFAPPDWEPGNLRCGLLPDLAAVGVEAAVIDVFEDALSRLPRELGERR
QVDFSDWDFARTRRAGLFLMEAEMLSTFAADLDDAEHPASERFRRMLSYAATKSAADYAV
ADRVLDAATLKMRRLFAQIDVLVLPTTPQGAFPLGGAVPDSQADLTSFASLAGCPAVSIP
MGTLPDGMPVGMQLVGARGSDLRLLELAEVCAATLDAEPVYPVEPRPLA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory