PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_4369 FitnessBrowser__Dyella79:N515DRAFT_4369 (460 amino acids)

SeqID: N515DRAFT_4369 FitnessBrowser__Dyella79:N515DRAFT_4369
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597639: L-serine dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_4369 FitnessBrowser__Dyella79:N515DRAFT_4369
MAVSVFDLFKIGIGPSSSHTVGPMRAAARFAERWLDEKGVLGRVARLRAELFGSLAMTGR
GHGTDKAVLLGFEGAHPDNVDPDRIPETLERIRHTKRLRVLGRHEIEFDEKRDLVFNKRQ
KLPFHTNGMRFTAYDAAGHELGTRDYYSVGGGFVVNQDEAAEDRIVADTTALPYPFSTGD
QLLALCEQHHLTIAQLMMENEKVWRSEAETRAGLLTIWKAMQDCVTRGLRSPGTLPGGLK
VTRRAPAMAQELRNQPEAALKDPLTILDWVNLYALAVNEENAAGGRVVTAPTNGAAGIVP
AVLHYYHRFCPKSNDDGVIEFLLTAAAIGILYKENASISGAEVGCQGEVGVACSMAAGGL
TAALGGNVLQVENAAEIGMEHNLGLTCDPIGGLVQIPCIERNAMGSVKAINASRMALKSD
GKHRVSLDKVIATMRDTGRDMKDKYKETSRGGLAVNVIEC

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory