PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_4411 FitnessBrowser__Dyella79:N515DRAFT_4411 (691 amino acids)

SeqID: N515DRAFT_4411 FitnessBrowser__Dyella79:N515DRAFT_4411
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [18 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2506997: Carbon starvation protein A]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_4411 FitnessBrowser__Dyella79:N515DRAFT_4411
MHTAVTKPSPAGKILWAAIAIVGAWCLGVVALRRGEPINAIWLVAAAIAVFVIGYRFYSR
FIDTYVLRMDPSRATPAVLRNDGLDYVPTDKWVVFGHHFAAIAGAGPLVGPVLAAQMGYL
PGTLWILFGVVFAGAVQDFMILGLSVRRDGRSLGNMLRDELGPVAGIVAMFGVLVLMMIV
LAVLALVVVKALTHSPWGTYTVACTIPIALLMGIYLRYIRPGKILEVSIVGLILLLLAIW
SGAYVAASPAWAAAFDFDAKALAWLLIAYGFCASVLPVWLLLAPRDYLSTFLKIGTIALL
ALAIFLAAPTLQMPALTKFVDGTGPVFQGNLFPFLFITIACGAVSGWHSIISSGTTPKLL
SNEGEARMVGYGGMLMEAFVAIMALIAAASMHPGVYFAMNSPAALIGTTAQSAATAISQW
GFVVSPDELLNTARNIGESSILSRAGGAPTLAVGMAQLLHGIIPGEGMMAFWYHYAILFE
ALFILTTVDAGTRVGRFMIQEIAGLIHEPLKHTESWTGNLIATAICVGLWGYFLYQGAVD
PLGGINTLWPLFGIANQMLAAVALMLATVVTVKLKRERYVWVPGIPAIWLVVCTLTAGYY
KLVGSISFTAAAQKYAAAAAEGKLLAPAKSVAEMQRIVTNNYVDAALTGIFMLLVVTMAG
FAINAILKAWRVNHPTAHEEPYVALEGAPTR