PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_0220 FitnessBrowser__Putida:PP_0220 (369 amino acids)

SeqID: PP_0220 FitnessBrowser__Putida:PP_0220
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 20141694: Glycine betaine/L-proline transport ATP-binding protein proV]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_0220 FitnessBrowser__Putida:PP_0220
MSQASALRAPTPQALPPMAREQALRPDVNEAHVRFIGLGKTYPGQAQPALQGIDLNIRHG
EIFGIIGRSGAGKSSLLRTINRLEQPSQGRVLIDQVDIAPFNEDQLVALRRRIGMIFQHF
NLMSAKTVWQNVELPLKVAGVAKAERQRKVRELLELVGLQEKHHVYPAQLSGGQKQRVGI
ARALVHTPEILLCDEATSALDPETTASILELLRDINQRLGLTIVLITHEMAVIRDICHRV
VVLERGAVVEQGEVWRVFGSPRHEVTRTLLAPLQAKLPAALQASLQAHPASGNSAVVLKL
TVLGEPELSALFNDLGGRVRLLQGGVETIGEHALGQLILSVQHSPHDTHQLLERARRWAE
DVEVLGHVD