PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_0229 FitnessBrowser__Putida:PP_0229 (667 amino acids)

SeqID: PP_0229 FitnessBrowser__Putida:PP_0229
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            CytoplasmicMembrane           [matched PS01303: BCCT Pattern - Cytoplasmic Membrane]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 114921: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_0229 FitnessBrowser__Putida:PP_0229
MSAPNPSLANGKIRMNPPVFYFAASFILIFGLVVISNPQAAGDWLLAAQNWAANTVGWYY
MLAMTLYLVFVVVTALSGYGKIKLGADHDEPEFSYLSWAGMLFAAGISITLFFFCVSEPL
THMLQPPQGEAGTVEAGRQAMQILFLHWGLHGWGVFAFVGMALAYFAYRHNLPLALRSAL
YPLIGKRINGPIGYAVDGFGIIATVFGLGADMGFGVLHLNAGLDYLFGISHSQWVQVILI
TLMMGAAVAVAVAGVEKGVRVMSDINLFLACALLLFVLFAGPTQHLFNTLIQNLGDYLGA
LPRKSFDVYAYGENRGWLGGWTVFYWAWWIAWAPFVGLFIARISRGRTIREFVFGVLLIP
LGFTLAWMSIFGNSALDQVINHGMTALGQSALDNPSMSLYLLLETYPWSKAVIATTVFIS
FVFFVTSADSGTVVLSTLSAKGGDADEDGPNWLRIFWGAMTALITSALLFAGSIDSLKSA
VVLTSLPFSLILLCMMWGLHKAFYLESQRQIAQMHSLAPFAQSRRGRGGWRQRLSQAVHF
PSRDEVYRFMDDVVRPAIADVREVFEQKGLVLITQDDPSHDNVSLKIGHGEEQPFIYQVQ
MRGYFTPSFALGGLGTQELKNRRYYRAEVHLSEGSQNYDLVGYSKEQIINDILDQYERHM
QYLHLVR