PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_0280 PP_0280 Amino acid ABC transporter, permease protein (229 amino acids)

SeqID: PP_0280 PP_0280 Amino acid ABC transporter, permease protein
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [4 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1708208: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_0280 PP_0280 Amino acid ABC transporter, permease protein
MNWEVIFKWLPRLAEGATLTLELVAIAVVAGLILAIPLGIARSSRHWYVRAVPFSYIFFF
RGTPLLVQLFLVYYGLAQFDAVRSSSLWPYLRDPFWCTVLTMTLHTAAYIAEILRGALQA
IPKGEIEAARALGMSRGKTLFYIMLPRAARIGLPAYSNEVILMLKASALASTVTLLELTG
MARTIIARTYLPVEIFFAAGVFYLVISFMLVQGFKLLERWLRVDACQGR