PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_0297 FitnessBrowser__Putida:PP_0297 (458 amino acids)

SeqID: PP_0297 FitnessBrowser__Putida:PP_0297
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600572: L-serine dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_0297 FitnessBrowser__Putida:PP_0297
MAISVFDLFKIGVGPSSSHTVGPMRAGALFVQGLRERGELERVKRIEVRLYGSLSATGIG
HGTDNATIMGLMGEWPDAIDPTQIVPRIADLRETNTLQLDSRLPIEFVWARDMLLLDENL
PYHPNAMTLIAEGEQGELHRDTYYSVGGGFVVDAAQAASGVLDADQTVLPYDFNSAAELL
RLCKQNDLSVSQLMMANEKVWRSEEDIRAGLHKLWEAMQECVNNGLKYEGTLPGGLNVRR
RAAKLHRSLQEIGKPNVIGSTMSAMEWVNLFALAVNEENAAGGRMVTAPTNGAAGIIPAV
LHYYMRFSDAVDESSVVDYFLAAAAVGILCKKNASISGAEVGCQGEVGSACAMAAAGLAE
VLGATPPQVENAAEIALEHNLGLTCDPVGGLVQVPCIERNAIAAVKAINAVQMALRGDGE
HFISLDQVIRTMRDTGADMHDKYKETSRGGLAVSAIEC