PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_0363 FitnessBrowser__Putida:PP_0363 (390 amino acids)

SeqID: PP_0363 FitnessBrowser__Putida:PP_0363
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595698: 8-amino-7-oxononanoate synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_0363 FitnessBrowser__Putida:PP_0363
MAFDLAARLAERRAADLYRQRPLLESPQGPEVVVDGQRLLAFCSNDYLGLANHPEVIAAW
QAGAERWGVGGGASHLVVGHSTPHHQVEEALAELTGRPRALLFSTGYMANLGAITALVGQ
GDTVLQDRLNHASLLDGGLLSGARFNRYLHNDPASLASRLDKAVGNTLVVTDGVFSMDGD
LADLPALANVARARGAWLMVDDAHGLGTLGAKGGGIVEHFGLGVDDVPVLIGTLGKACGT
AGAFVAGSEALIEALVQFARPYIYTTSQPPALACATLKSLELLRRETWRREHLAALIRQF
REGAQQLGLQLMDSPTPIQPIVIGDSAQALRLSRLLRERGLLVTAIRPPTVPAGSARLRV
TLSAAHSEAQVQLLLNALAECYPQLENADA