PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_0558 PP_0558 acetyl-CoA carboxylase - biotin carboxylase subunit (451 amino acids)

SeqID: PP_0558 PP_0558 acetyl-CoA carboxylase - biotin carboxylase subunit
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598087: geranyl-CoA carboxylase, alpha-subunit (biotin-containing)[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_0558 PP_0558 acetyl-CoA carboxylase - biotin carboxylase subunit
MSGKLEKVLIANRGEIALRILRACKELGIKTVAVHSTADRELMHLGLADESVCIGPASSK
DSYLHIPAIIAAAEVTGATAIHPGYGFLAENADFAEQVEKSGFAFIGPKADTIRLMGDKV
SAKDAMIKSGVPTVPGSDGPLPEDEEVALAIARDVGYPVIIKAAGGGGGRGMRVVHKEED
LISSAKLTRTEAGAAFGNPMVYLEKFLTNPRHVEVQVLSDGQGNAIHLGDRDCSLQRRHQ
KVLEEAPAPGIDEKARQEVFKRCVDACIEIGYRGAGTFEFLYENGRFYFIEMNTRVQVEH
PVSEMVTGIDIVKEMLSIAAGNKLSFRQEDVVIRGHSLECRINAEDPKKFIPSPGKVKHF
HAPGGNGVRVDSHLYSGYSVPPNYDSLIGKLITYGKDRDEAMARMRNALDEIVVDGIKTN
IPLHRDLVRDEGFCKGGVNIHYLEHKLANQE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory