PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_0999 FitnessBrowser__Putida:PP_0999 (309 amino acids)

SeqID: PP_0999 FitnessBrowser__Putida:PP_0999
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600366: carbamate kinase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_0999 FitnessBrowser__Putida:PP_0999
MRIVVALGGNALLRRGEPMTADNQRANIRTATEQIAKIHPGNELVIAHGNGPQVGLLSLQ
ALSYKPDEAYPLDVLGAETEGMIGYMIEQELGNLLAFEVPFATLLTQVEVDANDPAFKDP
TKFIGPVYSKEEAERLAKEKGWVVKADGDKYRRVVASPKPKRIFEIRPIKWLLEKSSIVI
CAGGGGIPTMYDENRKLKGIEAVIDKDLCSALLAEQLEADLLIIATDVDAAYIDWGKPTR
KAIAQAHPDALETLGFAAGSMGPKVQAACDFARNTGKVAVISSLENIEDIVKGKAGTRVS
TEKPGISYR