PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_1014 FitnessBrowser__Putida:PP_1014 (416 amino acids)

SeqID: PP_1014 FitnessBrowser__Putida:PP_1014
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_1014 FitnessBrowser__Putida:PP_1014
MTPLNLYVNSWLNAPAHTAWRLAEAQRLLAFAKAAKLPDGFGNLDANGQLAPGARAETIN
TARMTHCFALAHLQGIPGSLAYAEHGVAALRGAMQDATHGGWFAHPGGHDDSGKAAYLHA
FVALAASSAVVAGAVDANTLLADAIQVIEAHFWSEDEGALRETFSRAWQLPEQYRGANSN
MHATEAFLALADVTGNGLWLQRALRIAERIIHTHATANGYRVIEHFDVHWQPLPDYNLEH
PADPFRPYGTTPGHALEWARLLLHLEASLERAGLYAPQWLPDSARALFDTACQQAWNVDG
EPGFVYTLDWADRPVVHARLHWVHAEACAAAAALLQRTGEAHYEQWYRCCWGFIANHFID
PIGGSWHHELDAHNQPAGSLWPGKPDLYHAYQALLLPGLSLAPSLASNLAGNVTKR