PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_1213 FitnessBrowser__Putida:PP_1213 (591 amino acids)

SeqID: PP_1213 FitnessBrowser__Putida:PP_1213
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Cytoplasmic                   [matched PS50862: AA_TRNA_LIGASE_II Profile - Cytoplasmic ]
    SCL-BLAST-        Cytoplasmic                   [matched 37999411: Aspartyl-tRNA synthetase]
    SCL-BLASTe-       Cytoplasmic                   [matched 100% 37999411: Aspartyl-tRNA synthetase]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            10.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Periplasmic            0.00
    Extracellular          0.00
  Final Prediction:
    Cytoplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_1213 FitnessBrowser__Putida:PP_1213
MMRSHYCGQLNESLDGQEVTLCGWVHRRRDHGGVIFLDIRDREGMAQVVFDPDRAETFAA
ADRVRSEYVVQITGKVRKRPEGAVNANMASGAIEILGYQLNVLNEAETPPFPLNEYSDVG
EETRLRYRFIDLRRPEMADKLRLRSRITSSIRRFLDENGFLDVETPILTRATPEGARDYL
VPSRTHAGSFFALPQSPQLFKQLLMVAGFDRYYQIAKCFRDEDLRADRQPEFTQIDIETS
FLDESEIMGLTESMIRKLFKEVLDLEFGEFPHMTFEEAMRRYGSDKPDLRIPLELVDVAD
QLKDVDFKVFAGPANDPKCRVTALRLPGGASMPRSKIDEYTKFVGIYGAKGLAYIKVNER
AKGVEGLQSPIVKNIPEANLNNILDRVGAVDGDIVFFGADKFKVVSEALGALRIRLGHDF
ELLTCEWAPMWVVDFPMFEENEDGSFTALHHPFTAPKCTPEELEANPATALSRAYDMVLN
GTELGGGSIRIHRKEMQQAVFRLLGIEAEEQEEKFGFLLDALKFGAPPHGGLAFGLDRLV
MLMTGAQSIREVIAFPKTQSAACVMTQAPGMVDAKALRELHIRLREQTKVE