PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_1403 FitnessBrowser__Putida:PP_1403 (763 amino acids)

SeqID: PP_1403 FitnessBrowser__Putida:PP_1403
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15596923: periplasmic beta-glucosidase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_1403 FitnessBrowser__Putida:PP_1403
MMKLSLLGLAMGLASQAALAAPTAPPLQDKQAFIEHLISQMTEAEKIGQLRLISIGPEMP
RDKIREEIAAGRIGGTFNSRTAPENRPMQDAAMRSRLKIPMFFAYDTVHGERTIFPIGLG
MAATWDMEAVAKVGRTAAIEASADALDMTFAPMVDIARDPRWGRTSEGFGEDTYLTSRIG
QVMVRSFQGSSPANPDSIMAIVKHFALYGAVEGGRDYNTVDMSLPKMYNDYLPPYRAALD
AGAGGVMVALNSINGVPATSNTWLMNDLLRKEWGFKGVTISDHGAIQELIRHGVARDGRE
AAKLAIKAGIDMSMNDTLYGEELPGLLKSGEVTQRELDQAVREVLGAKYDMGLFKDPYVR
IGKAETDLKDYYGNDRLHREAARDVARRSLVLLENRNQTLPLKKAGTIALVGPLADAPID
MMGSWAADGKPVHSVTVREGLRRAVEGKAKLVYAKGSNVTGDKAIFDYLNFLNFDAPEIV
DDPRPPAVLIDEAIKAAKQSDVVVAVVGESRGMSHESSSRTTLEIPASQRELIKALKATG
KPLVLVLMNGRPLSISWEREQADAILETWFAGTEGGNAIADVLFGDYNPSGKLAITFPRS
VGQIPMYYNHTRIGRPFTPGKPGNYTSQYFEEPNGPLYPFGYGLSYSSFELSGLNLSSKD
LKRGDTLDAKVTVKNTGKVAGETVVQLYLQDVSASMSRPVKELKNFQKLMLEPGETRTLT
FRISEDDLKFYNGQLQRVAEPGEFNVQVGLDSQAVQQQSFELL