PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_1770 FitnessBrowser__Putida:PP_1770 (746 amino acids)

SeqID: PP_1770 FitnessBrowser__Putida:PP_1770
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_1770 FitnessBrowser__Putida:PP_1770
MVNAAKTKPAPIIDRLVVVGLGLIGGSFAKGLRESGLCREVVGVDLDAPSRKQAVALGVV
DRCEEDLAAACVGADVIQLAVPILAMEKVLARLALLDLGDAIITDVGSAKGNVVREARAV
FGARLPRFVPGHPIAGSEQSGVEASNATLFRRHKVILTPLAETDPAALVLVDRLWRALDA
DVEHMSVERHDEVLAATSHLPHLLAFGLVDSLAKRNENLEIFRYAAGGFRDFTRIAGSDP
TMWHDIFLANRDAVLRTLDTFRSDLDALRDAIAEGDGHQLLGVFTRARVAREHFSKILAR
RAYVDAMNANDLIFQAQPGGRLNGRIRVPGDKSISHRSIMLGSLAEGTTEVEGFLEGEDA
LATLQAFRDMGVVIEGPNHGRVTIHGVGLHGLKPPPGPLYVGNSGTSMRLLSGLLAGQPF
DVTMTGDASLSKRPMNRVANPLREMGAVVETGPDGRPPLTIRGGHKLKGLTYTLPMASAQ
VKSCLLLAGLYAEGKTTVTEPAPTRDHTERMLRGFGYSVDSHGPVASLQSGGKLTATRIE
VPADISSAAFFLVAASIAEGSELVLEHVGINPTRTGVIDILRLMGGDITLENQREVGGEP
VADLRVRGAKLKGIDIPEALVPLAIDEFPVLFVAAACAEGRTVLRGAEELRVKESDRIQV
MADGLTTLGIKCEPTPDGIIIDGGQMGGGEVHGHGDHRIAMAFSVASLRASAPIRIHDCA
NVATSFPNFLALCAEVGIRVAEEGKS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory