PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_1785 FitnessBrowser__Putida:PP_1785 (366 amino acids)

SeqID: PP_1785 FitnessBrowser__Putida:PP_1785
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600647: oxidoreductase Rmd[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_1785 FitnessBrowser__Putida:PP_1785
MILVTGGAGFIGSNFVLQWCAHNEEPVLNLDALTYAGNLANLQPLEGNPQHRFVQGNICD
AALLTKLFAEHRPRAVVHFAAESHVDRSITGPEAFVETNVMGTFRLLEAARAHWNSLEGA
EKEAFRFLHVSTDEVYGTLGPNDPAFTETTPYAPNSPYSASKAASDHLVRSYFHTYGMPV
LTTNCSNNYGPLHFPEKLIPLMIVNALAGKALPVYGDGQQIRDWLYVEDHCSGIRRVLEA
GAFGETYNIGGWNEKANIDIVRTLCSLLDEMAPAASRQVINQKTGEPVEQYAELIAYVTD
RPGHDRRYAIDARKIERELGWKPAETFETGIRKTVAWYLANQKWVKGVMDGSYRDWVAQQ
YGANKA