PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_2372 FitnessBrowser__Putida:PP_2372 (358 amino acids)

SeqID: PP_2372 FitnessBrowser__Putida:PP_2372
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 732294: ABC transporter periplasmic-binding protein ytfQ precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_2372 FitnessBrowser__Putida:PP_2372
MLKALCQSLCLVLPLVANAQPASVVFLNPGLSTETFWTSYTRFMQAAADELGMTLQVQYS
ERRADLTLTQARAILSAPQRPDYLVLVNEQYVAPEILRLSRGTGVKLLLVNNGLTASQRL
SIEGQPDKYAEPLGTLMSNDEQAGFQMLHLMLAQLPRDAGPVDLVAFAGVKTTPASQLRV
EGMRRALADFPQVRLRQVVYGGWNRQRAYEQAKQLLERYPATRLVWSANDQMAFGAMQAF
EEAGHTPGRDVLFAAVNSSPEALRARIDGRLSVLMGGHFTLGGWAMVMLHDDAHGLALNR
DGVRERRIPVLQEIDQAKARRWLKLLERDDYGVDFRRYSAEGRPPGYRYPFLASPVEY