PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_2443 FitnessBrowser__Putida:PP_2443 (403 amino acids)

SeqID: PP_2443 FitnessBrowser__Putida:PP_2443
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [9 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84027966: Inner membrane symporter ygjU]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_2443 FitnessBrowser__Putida:PP_2443
MTPFLRILNRTSLVTQIVIGLLAGIALALLAPAIARDLAFLGKVFVSALKAVAPVLVFIL
VMASVANHRHGQETHIRPILWLYLLGTFAAAVVAVFASMLFPSHLALSTSEATLSAPGGI
AEVLQNLLLNAVDNPVNALLNANFIGVLTWAIGLGVALRHAGETTRTVVEDLSNGVTLIV
RVVIRFAPLGIFGLVSSTLAQSGLDALLGYLHLLAVLIGCMLFVALVMNPLIVFWKIRRN
PYPLTLLCLRESGITAFFTRSSAANIPVNLALSERLGLHEDTYSVSIPLGATINMAGAAI
TITVLTLAAVHTLGIQVDLPTAVLLSVVAAVCACGASGVAGGSLLLIPLACSLFGIPSEI
AMQVVAVGFIIGVLQDSAETALNSSTDVLFTAAACQAQEQRHG