PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_2704 FitnessBrowser__Putida:PP_2704 (394 amino acids)

SeqID: PP_2704 FitnessBrowser__Putida:PP_2704
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Extracellular          0.26
    Periplasmic            0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_2704 FitnessBrowser__Putida:PP_2704
MGILQSNQTPGSAAELDEFVMLRRQIHAAPEIGGDTPDTSALVADKLQALGYEVHRNVGG
HGVVGVLKVGDSPRSIGLRADMDALPMGEKNAFAHASKIPGRMHACGHDGHTAILLAAAA
QLAATRQFNGTLNVIFQPDEEGLAGAKAMIDDGLFERFPCDSVYALHNMPGLPVGTCVVQ
AGPTMASSERVSIRITGKGGHGAMPELSVDPVMALNSLISGIQTIKSRNLSVEDYAVISI
GMIQAGTVYNIIPDEACMLLSVRTDTAQTQQKINSRIDALAKGHAESYGVEIDVQFTQLA
PALCNSDHESTLLRDSLRPLFADGALLDKMPKKVMGTEDFAYMLQARPGCYFMLGNGTGE
FHGCSVHNPHYDFNDALVKIGADCWVKWVQDYLR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory