PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_2830 FitnessBrowser__Putida:PP_2830 (450 amino acids)

SeqID: PP_2830 FitnessBrowser__Putida:PP_2830
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 4033491: Inner membrane transport protein yfaV]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_2830 FitnessBrowser__Putida:PP_2830
MPLLRGTPPALFTGKKTMTTLTRAAACAPATTHEQRLNGLLLRKLMPLLIVVYVMSFLDR
TNIALAKASMGIDLGLSAAAYGLGAGLFFLTYALAEVPSNLIMHRVGARFWITRIMITWG
LLSAGMAFVQGETSFYIMRLLLGVAEAGLFPGVMLYLTYWFDREQRARATGYFLLGVCVA
NILSGPLGGALLELDGVLGWHGWQWLFVLEGLPAVALAYVVWKKLPDGPASAPWLTAADA
QDIERRLAAEQAAAPQQSKLGQMFRDRQIWLAIAVYFVHQITIYTVIFFLPGIIGTYAAL
SPFQVGLLTAVPWIAAAIGAATLPRLATSPRRCRTLLFLGLLTMAAGLLLASLTNSFIGL
IGFSLTALMLFVVQSIIFVFPSSRLSGSALAAGLAFVTTCGLFGGFVGPSVMGLIEQTTG
STRNGLWIIAALLVCAALVSTRLRQGQEQP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory