PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_3134 FitnessBrowser__Putida:PP_3134 (231 amino acids)

SeqID: PP_3134 FitnessBrowser__Putida:PP_3134
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 135739: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_3134 FitnessBrowser__Putida:PP_3134
MSAMRSAPRRTRPERLRRLQIVQIARPGSMKGWIRKAVARYAHATGRGGKFYRRFCNPSG
LEWGAYLARWGNFHSVGSNFYVNTGCKFLDPSLVRIGNSVGLSDCTLIGHDGVVLLIEHR
FGKHLDSVGFIDIKDNCFIGHGAIVMPRVTIGPESIVAAGAVVTKDVPPGTVYGGNPAEF
ICTTEQLIKRVEARCEAYPWIDLVKQRNGAYDPEVEPLLMAQRRQYFFGDS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory