PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_3197 FitnessBrowser__Putida:PP_3197 (313 amino acids)

SeqID: PP_3197 FitnessBrowser__Putida:PP_3197
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_3197 FitnessBrowser__Putida:PP_3197
MNILGLDALVFGVDDIQACADCLRDYGLDAVQLDGDGGRFEALDGTSIIIRRGDDPGLPP
ALGPTPSLRETVYGVASSTDLAAIADELGRDREVRRDASGALHTFDDLGFAIAFQVTCRR
PFDAPADLTNAPGSAPQRPINQLGIAPDMPALPRTLSHVVYFVPDAAKGEAFYRDRLGFV
TTDSFIGVGPFMRTAAMDDHHCLFMIQTPPHMQGCEHFTFHMGSGTEVLLAGTRFQQQGW
TSFWGPGRHLLGSNWFWYFNSPLGCHIEYDADMDKHDDAWAARQAPMSADNSQLFLFASR
EKWAPSGPPAKQG