PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_3309 FitnessBrowser__Putida:PP_3309 (333 amino acids)

SeqID: PP_3309 FitnessBrowser__Putida:PP_3309
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597128: probable hydroxylase molybdopterin-containing subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_3309 FitnessBrowser__Putida:PP_3309
MTPFSYHKPASISEAVSLADASSHFIAGGTNLVDLMKENVVRPKRLIDISGLGLNGIHPT
LNGGLLIGALVSNADLAWHPMIEQHYPLLSDAILAGASPQLRNMASTGGNLLQRTRCYYF
YDTGTPCNKREPGSGCPARTGSNRIHAILGASDACVATHPSDMCVALAALEAVVHVQGPR
GERQIPFAAFHRLPEDTPERDNQLAIDELVVAIELPPPVFEKHYRYLKIRDRASYAFALV
SVAAALSFDGQVIRQARLALGGVAHKPWRDPVVERMLAGQAPCEALFTRAAKTLLQGAKP
LSHNGFKVTLAQRAIVRALDDAARGAADGGPRP