PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_3571 PP_3571 putative Acetylornithine deacetylase (391 amino acids)

SeqID: PP_3571 PP_3571 putative Acetylornithine deacetylase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600583: probable peptidic bond hydrolase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_3571 PP_3571 putative Acetylornithine deacetylase
MGCRAMSEFASRALLARLIGFATVSRDSNLALIGFIRDYLAELGVECELFHNPEGTKANL
FATVGPRDVGGVVLSGHTDVVPVDGQAWTVEPFALSERDGRLYGRGTADMKGFIASVLAA
VPAFLAQPLRMPVHLAFSYDEEVGCLGVRSMLAALQQRPCKPRLCLIGEPTELKPVLGHK
GKLAMRCQVQGAACHSAYAPYGVNAIEYAAKLIGKLGEIGEALALPVHHDERFDPPFSTV
QAGVIKGGRALNIVPDECEFDFEVRALPGFEAQAVADQLQTYAEAELLPRMRKVNTASAI
RLAPLSAYPGLATPEDSEAARLVALLSGSDTFGTVAFGTEGGLFDQAGIPTVVCGPGSMD
QGHKPDEFVSVEQLRGCDAMLLRLVDYLKQA