PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_3633 FitnessBrowser__Putida:PP_3633 (313 amino acids)

SeqID: PP_3633 FitnessBrowser__Putida:PP_3633
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595859: N-acetyl-gamma-glutamyl-phosphate reductase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_3633 FitnessBrowser__Putida:PP_3633
MHTPVVFIDGDQGTTGLQIHARLQGRSDLRLLTLPEAERKDPQRRCEAINSADIALLCLP
DDAAREAVAAIHNPQVRVIDASSAHRTTPGWVYGLPELDEQQAERIAQSTRVSNPGCYPT
GAIALLHPLVKAGLLPADYPLNIHAVSGYSGGGRAAVERHEQPGAAKAPALQLYGLELAH
KHVPEIQQHAGLSARPMFMPGYGAYRQGIALSIPLQLRLLPGQVSAEHLQACLEQHYQGA
RHVQVMPLHQCGAAANLDPEALNGSNDLRLALYANPEHGQVLLTAVFDNLGKGASGAAVQ
NLDLMLGALQAHG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory