PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_3786 FitnessBrowser__Putida:PP_3786 (402 amino acids)

SeqID: PP_3786 FitnessBrowser__Putida:PP_3786
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599909: probable aminotransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_3786 FitnessBrowser__Putida:PP_3786
MQATVFNTFFRETSLAPDSDDFFKWVRTLKSSTAGQPLLDFGVADAFIPPADELSQALSS
LATRRELHGYVYHHSAYEAACLRHATQGMDAPPALAVLPTSGAKSALNLLCLALIDTGDV
ILATTPAYPIFSTIARRMGATVVHLPLLEENDFLPDLHQLSPEVLARAKLLIVNYPNNPT
GKVASQQECDRLLAICRDHDILLINDAAYSDLLPAERPRGRFLYSEGASSHCIEVHSFSK
SLQIPGWRLGFILAAPAIIEALGKLSLLHESGQPRILLDAVTCILDDRGFAERLCQCIAQ
RRAVMVDILQAHGLEVLNADGTFFVYVRCPAAVSNGRTFATARDFSQYLATELGILTIPY
QVAGRHQVRFSVAFCGEAETVFNRLRQQLSNVQFSLAERVSA