PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_3954 FitnessBrowser__Putida:PP_3954 (316 amino acids)

SeqID: PP_3954 FitnessBrowser__Putida:PP_3954
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_3954 FitnessBrowser__Putida:PP_3954
MNPALRLALASTLFAVSAAAQAAPTFINILTGGTSGVYYPVGVGISQIYSHGIEGSKTTV
QATKASVENLNLLQAGRGELAFALGDSVADAWKGDAEAGFKTPLKKLRAIAGTYPNYIQI
VASKESGITSLSDLKGKRISVGAPKSGTELNARAIFKAAGLTYQDMGKVEYLPYAESVEL
IKNRQLDATLQSSGLGQAAIRDLAATLPVVFVPIPAEVVTRIGNNAYQPATIPANTYDGQ
SADVSTAAINNILVTRADIGDDLAYQMTKLIFENLPRLVTAHAAAKDIQAENAAKNLPIP
LHPGAARYFKEKNLLP