PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_3957 FitnessBrowser__Putida:PP_3957 (657 amino acids)

SeqID: PP_3957 FitnessBrowser__Putida:PP_3957
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            CytoplasmicMembrane           [matched PS01303: BCCT Pattern - Cytoplasmic Membrane]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 114921: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_3957 FitnessBrowser__Putida:PP_3957
MTAAPKPRSTLNPPVFYTSAILVFLLVLYATAFQEHAQTLFEQVQRWIITNASWFYILVV
ALVLISVVFLAVSRYGDIKLGPDHSEPDYRKSSWFAMLFSAGMGIGLMFFGVAEPVMHFS
TPPVGDPGTVAAAREAMKITFFHWGLHAWAIYAIVALILAYFSFRNGLPLTLRSALYPLI
GERIYGPIGHAVDVFAILGTVFGVATSLGYGVLQINSGFHHVFGLPVNTTVQVILITATC
ALATLSVASGLDKGIRILSELNLSLAVILMLFVLLLGPTVFLLQTYVQNTGAYLSDIVNK
TFNLYAYEPTDWIGGWTLLYWGWWLSWSPFVGLFIARISRGRTIREFVCGVLFVPAGFTL
LWMTVFGDSAIHMILNDGVKDLAAVVSEDSSLALFAFLEHFPFSSIISLVAVLMVVVFFV
TSADSGALVVDMLASSGQGHSPLWQRIFWSVCIGAVAIALLLANGLKALQTATIASALPF
AVILLVAIWGLFKALSLDATRRGLRNQALPGPRHTRHPHGGWQRRLRNIALMPRRVHVTR
FIAEVVRPACEEVAQELRKQGYEVSVNERDDGRVSLELSHAGEGRFLYEVRPRAFNTPSF
VMRDTEDGADSRKYFRAEVHLREGGQDYDIMGWSRDDVIGDILDQYERHLHYLHVVG