PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_4154 FitnessBrowser__Putida:PP_4154 (976 amino acids)

SeqID: PP_4154 FitnessBrowser__Putida:PP_4154
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 39932236: Taurine--pyruvate aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_4154 FitnessBrowser__Putida:PP_4154
MSSPQHQPASPALATLIQRSGQPSPTLSEAQAHAVLQAHYGLAGNLSVLGSQQDLNFRVV
TPQGGYVLKACHGSYAQLELEAQHAALAFLRDQGLPVPAVRSAHNGMGLLELDIDAQPLR
LRLLDYIEGQPLTRLKHMEPRLMAELGGLCAKLDKALAHFDHPGLARTLQWDPQHAGALI
DHLLPVLQDGGQRARIEHATRQANEHLMPLVDQLPSQAVHLDITDDNTVWARDAQRQWQL
QGVIDFGDLLRTWRIADLSVTCAALLHHAEGDPLRILPAVQAYQALNPLTEAELRALWPL
VLNRAAVLVLSSEQQLTVDPGNQYTRDNIAHEWEIFDTATAVPFALMEAAILQAAGLQPA
APDWNDCAPLLPELAGLAVTRVDLGVLSKHFEAGNWEQPGYDQHLLTSQAAPACSLHGQY
RLSQTHIDRPEEPATCALFVELHVPNGSPVQAPAAGTWQHSGDGRGCLRTPHWALWLQGL
EDAPADGQAVEKGQALGSSCGFLSVQVCLDNGSQPPRFATPSQAAAWLALCPSPAALLGF
DCDAEPLPDPQALLARRDASFARSQKHYYAQPPHIERGWRNYLIDMQGRSYLDMLNNVAV
LGHGHPRMVAESARQWSLLNTNSRFHYAAITEFSERLLDLAPEGFDRVFMVNSGTEANDL
AIRLAWAYSGGRDLLSVLEAYHGWSVATDAISTSIADNPQALETRPDWVHPVEAPNTFRG
RFRGADSAADYLQDVDAKLADLDARGRQLAGIICEPVYGNAGGISLPAGYLRAAYAKVRA
RGGVCIADEVQVGYGRLGEYFWGFEEQGVVPDIITMAKGMGNGQPLGVVITRREIAEALE
AEGYFFSSAGGSPVSCRIGMAVLDVMQEEGLWDNARDTGRYFKARLQALVDKHPLAGAAH
GSGFYLGLELVRDRTTLEPATEETMMLCDRLRDLGIFMQPTGDYLNILKIKPPMCTSRAS
VDYFVDSIDRVLGEGL