PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_4300 FitnessBrowser__Putida:PP_4300 (424 amino acids)

SeqID: PP_4300 FitnessBrowser__Putida:PP_4300
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596696: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_4300 FitnessBrowser__Putida:PP_4300
MSVDPQKLLRELFDTAIAAAHPRQVLEPYLPADRSGRVIVIGAGKAAAAMAEVVEKSWQG
EVSGLVVTRYGHGANCQKIEVVEAAHPVPDAAGLAVAKRVLELVSNLNEEDRVIFLLSGG
GSALLALPAEGLTLADKQQINKALLKSGATIGEMNCVRKHLSAIKGGRLAKACWPATVYT
YAISDVPGDLATVIASGPTVADPSTSADALAILKRYNIEAPKAVIDWLNNPASETVKADD
PALARSHFQLIAKPQQSLEAAAVKARQAGFSPLILGDLEGESREVAKVHAGIARQIVQHG
QPLKAPCVILSGGETTVTVRGNGRGGRNAEFLLSLTESLKGLPGVYALAGDTDGIDGSEE
NAGAFMTPASYASAEALGLSASDELDNNNGYGYFAALDALIVTEPTRTNVNDFRAILILE
TAQS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory