PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_4453 FitnessBrowser__Putida:PP_4453 (610 amino acids)

SeqID: PP_4453 FitnessBrowser__Putida:PP_4453
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 6174923: Oligopeptide transport ATP-binding protein oppD]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_4453 FitnessBrowser__Putida:PP_4453
MNGSLPLNQETVLEVTGLNVAFRRGGGWSPVVKDLSFRVARGETLAIVGESGSGKSVSAM
SILGLLPANTSQVTGSIRLQGQELLCLPEPEMADIRGNRIAMIFQEPMTSLNPVMTIGEQ
IAEPLRLHRGLDATQAKEEALKLMERVRIPAAQERYDDYPHQFSGGMRQRVMIAMALACN
PAVLIADEPTTALDVTIQAQILELIKELQAQEHMAVVFITHDMGVVAQIADRTLVMYRGD
LVETASTSEIFSAPQKPYTKALLSAVPELGSMAAEPSPKPFPIYDMAAGSNVPAPEMKDS
VRHTKPYLLEVSGLTTRFDVRSGFFKRVTGRVHAVENVSFNLSQGETLAIVGESGCGKST
TGRLITGLLDPTHGSVKLEGVELGSITPMERARKIQMVFQDPYSSLNPRQTVAQSIIEPL
RVHGLYDAKRCEEVAIELLVKVGLPADAAWRLPHEFSGGQRQRVCIARALALRPGTIVAD
EAVSALDVSVKVQIVNLLLELQQELGLGFIFISHDMAVVERVSHRVAVMYMGEIVEIGPR
AAIFNDPKHPYTRRLIDAVPIPDPARKQVQRVSAGTLRTPYKAHDFIPPARVYHQAGEGH
FYMEPEGEWC